PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G169700.1
Common NameB456_001G169700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 320aa    MW: 35493.3 Da    PI: 8.6508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G169700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-091442129
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                        +g+W +eEde+l+++++++G g+W++ ++
  Gorai.001G169700.1 14 KGPWGPEEDEILINYINKHGHGSWRSLPK 42
                        79***********************9877 PP

2Myb_DNA-binding48.81.6e-1591136148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  Gorai.001G169700.1  91 RGPFTLDEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 136
                         89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23588IPR009057Homeodomain-like
PROSITE profilePS5129410.41985IPR017930Myb domain
SuperFamilySSF466891.0E-7943IPR009057Homeodomain-like
SMARTSM007171.8E-91387IPR001005SANT/Myb domain
PfamPF002492.2E-71442IPR001005SANT/Myb domain
CDDcd001674.51E-71685No hitNo description
SuperFamilySSF466891.0E-2171142IPR009057Homeodomain-like
PROSITE profilePS5129424.50686140IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2589140IPR009057Homeodomain-like
SMARTSM007172.0E-1490138IPR001005SANT/Myb domain
PfamPF002491.7E-1491136IPR001005SANT/Myb domain
CDDcd001674.87E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRRPCCERK GLKKGPWGPE EDEILINYIN KHGHGSWRSL PKLSALWKFL FCRVSPLQPI  60
KGLISTLTGL RRCGKSCRLR WTNYLRPDIK RGPFTLDEEK LVIQLHAILG NRWAAIASQL  120
PGRTDNEIKN LWNTHLKKRL LCMGVDPLTH EPFTSGGPTT RPRSSPATRH MAQWESARLE  180
AEARLSKESL FFNSPPTSVK PDPDFFLRLW NSEVGESFRK LNGEAKADCR SPISQASSST  240
KCGSVSGVTI DVGPIAAGSS TPKSSRTEDP IMFDASFSSS SNESEDSSDT ALQLLLDFPI  300
NNDMSFLDDV DTYATPPQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25121405108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591694e-70AJ459169.1 Gossypium hirsutum partial myb139 gene, clone pGhMYB139.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482512.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A0D2NAE80.0A0A0D2NAE8_G
STRINGPOPTR_0014s07700.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-115myb domain protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]